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large klenow fragment  (New England Biolabs)


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    Structured Review

    New England Biolabs large klenow fragment
    Large Klenow Fragment, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 6889 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/large+klenow+fragment/Klenow+Fragment/pm42117222-281-13-16
    Average 99 stars, based on 6889 article reviews
    large klenow fragment - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Labeling:

    Article Title: 3D Chromatin Architecture Provides Insights Into Leaf Trait Variation Among Pear Species.
    Article Snippet: Subsequently, the cross-linked nuclei were permeated with 0.3% SDS at 65◦C for 10 min. SDS were quenched by 1.8% Triton X100 at 37◦C for 15 min. Chromatin was then digested with 100 U of MboI (NEB) restriction enzyme for 2 h at 37◦C. .. DNA ends were labeled with biotin-14-dCTP (Invitrogen) by incubating with DNA Polymerase I, Large Klenow Fragment (NEB) at 37◦C for 45 min, after which the reaction was inactivated by incubation at 65◦C for 20 min. DNA ligation was performed by 50U T4 DNA ligase (Thermo) at 16◦C for 4 h. Afterward, proteinase K was added to the sample and incubated at 65◦C overnight to reverse the cross-linking. .. DNA was extracted using the Qiagen DNeasy Plant Mini Kit (Qiagen, #69106), following the manufacturer’s instructions.

    Article Title: Cooperative Roles of Pds5a and Pds5b Constrain Long‐Range Chromatin Interactions in Vertebrate Embryos
    Article Snippet: The lysate was centrifuged at 2500 g for 5 min, washed once with ice‐cold Hi‐C lysis buffer, resuspended in 50 μL of 0.5% SDS, and incubated at 62°C for 10 min. After adding 145 μL of water and 25 μL of 10% Triton X‐100, samples were incubated at 37°C for 15 min. Next, 25 μL of 10× NEBuffer 2 and 100 U of MboI were added, and chromatin was digested at 37°C for 2 h with rotation. .. MboI was inactivated by incubation at 62°C for 20 min. DNA ends were labeled with biotin by adding 50 μL of fill‐in master mix (37.5 μL of 0.4 mM biotin‐14‐dATP [Life Technologies], 1.5 μL each of 10 mM dCTP, dGTP, and dTTP, and 8 μL of 5 U/μL DNA Polymerase I Large Klenow Fragment [NEB]) and incubating at 37°C for 1.5 h with rotation. ..

    Incubation:

    Article Title: 3D Chromatin Architecture Provides Insights Into Leaf Trait Variation Among Pear Species.
    Article Snippet: Subsequently, the cross-linked nuclei were permeated with 0.3% SDS at 65◦C for 10 min. SDS were quenched by 1.8% Triton X100 at 37◦C for 15 min. Chromatin was then digested with 100 U of MboI (NEB) restriction enzyme for 2 h at 37◦C. .. DNA ends were labeled with biotin-14-dCTP (Invitrogen) by incubating with DNA Polymerase I, Large Klenow Fragment (NEB) at 37◦C for 45 min, after which the reaction was inactivated by incubation at 65◦C for 20 min. DNA ligation was performed by 50U T4 DNA ligase (Thermo) at 16◦C for 4 h. Afterward, proteinase K was added to the sample and incubated at 65◦C overnight to reverse the cross-linking. .. DNA was extracted using the Qiagen DNeasy Plant Mini Kit (Qiagen, #69106), following the manufacturer’s instructions.

    Article Title: Chromatin reorganization drives overexpression of a Btaf1 variant underpinning hematopoietic aging
    Article Snippet: .. 25 μl of fill-in master mix containing 18.75 μl of 0.4 mM biotin-14-dATP (19524016, ThermoFisher), 0.75 μl of 10 mM dTTP (18255018, ThermoFisher), 0.75 μl of 10 mM dCTP (18253013, ThermoFisher), 0.75 μl of 10 mM dGTP (18254011, ThermoFisher), 4 μl of DNA Polymerase I Large (Klenow) Fragment (M0210L, NEB) was added, and incubated in a thermomixer at 37 °C for 1.5 h with 1,000 rpm mixing. .. 450 μl of ligation master mix containing 60 μl of T4 DNA ligase buffer (B0202S, NEB), 47.5 μl of 10% Triton X-100, 3 μl of 20 mg/ml BSA (B9000S, NEB), 5 μl of 400 U/μl T4 DNA Ligase (M0202L, NEB), 334.5 μl of water was next added and incubated at RT for 4 h with slow rotation.

    Article Title: Cooperative Roles of Pds5a and Pds5b Constrain Long‐Range Chromatin Interactions in Vertebrate Embryos
    Article Snippet: The lysate was centrifuged at 2500 g for 5 min, washed once with ice‐cold Hi‐C lysis buffer, resuspended in 50 μL of 0.5% SDS, and incubated at 62°C for 10 min. After adding 145 μL of water and 25 μL of 10% Triton X‐100, samples were incubated at 37°C for 15 min. Next, 25 μL of 10× NEBuffer 2 and 100 U of MboI were added, and chromatin was digested at 37°C for 2 h with rotation. .. MboI was inactivated by incubation at 62°C for 20 min. DNA ends were labeled with biotin by adding 50 μL of fill‐in master mix (37.5 μL of 0.4 mM biotin‐14‐dATP [Life Technologies], 1.5 μL each of 10 mM dCTP, dGTP, and dTTP, and 8 μL of 5 U/μL DNA Polymerase I Large Klenow Fragment [NEB]) and incubating at 37°C for 1.5 h with rotation. ..

    DNA Ligation:

    Article Title: 3D Chromatin Architecture Provides Insights Into Leaf Trait Variation Among Pear Species.
    Article Snippet: Subsequently, the cross-linked nuclei were permeated with 0.3% SDS at 65◦C for 10 min. SDS were quenched by 1.8% Triton X100 at 37◦C for 15 min. Chromatin was then digested with 100 U of MboI (NEB) restriction enzyme for 2 h at 37◦C. .. DNA ends were labeled with biotin-14-dCTP (Invitrogen) by incubating with DNA Polymerase I, Large Klenow Fragment (NEB) at 37◦C for 45 min, after which the reaction was inactivated by incubation at 65◦C for 20 min. DNA ligation was performed by 50U T4 DNA ligase (Thermo) at 16◦C for 4 h. Afterward, proteinase K was added to the sample and incubated at 65◦C overnight to reverse the cross-linking. .. DNA was extracted using the Qiagen DNeasy Plant Mini Kit (Qiagen, #69106), following the manufacturer’s instructions.

    Modification:

    Article Title: Method of screening for compounds that inhibit proliferation of pancreatic cancer cells having a loss-of-function mutation in the RNF43 gene
    Article Snippet: .. Briefly, IentiCRISPR pXPR_001 (Addgene 49535) was modified through removal of the sgRNA scaffold region through Ndel/EcoRI digest and blunt ends generation using Large Klenow Fragment (NEB). ..

    Purification:

    Article Title: Influenza A virus NS1 sequesters RNA:DNA hybrids to evade RNase H1-dependent innate immunity
    Article Snippet: .. Second-strand synthesis was performed on ssDNA using random hexamers, dNTPs, and the Large (Klenow) Fragment (NEB) according to the manufacturer’s instructions, followed by purification with 2x volume AMPure XP beads (Beckman Coulter). .. Sequencing libraries were prepared from the resulting dsDNA using the Nextera XT DNA Library Preparation Kit and sequenced on the MiSeq platform (Illumina, to a depth of ≥1 5 single-end 151-bp reads).

    Control:

    Article Title: Functionally-derivatized Nanoantibodies as novel tools for Giardia lamblia cyst detection
    Article Snippet: .. Control plasmid 139 was generated by excision of the ccdB gene for negative selection in plasmid pBXNPHM3, followed by treatment with DNA Polymerase I Large (Klenow) Fragment (NEBiolabs) and blunt-end ligation. ..

    Plasmid Preparation:

    Article Title: Functionally-derivatized Nanoantibodies as novel tools for Giardia lamblia cyst detection
    Article Snippet: .. Control plasmid 139 was generated by excision of the ccdB gene for negative selection in plasmid pBXNPHM3, followed by treatment with DNA Polymerase I Large (Klenow) Fragment (NEBiolabs) and blunt-end ligation. ..

    Generated:

    Article Title: Functionally-derivatized Nanoantibodies as novel tools for Giardia lamblia cyst detection
    Article Snippet: .. Control plasmid 139 was generated by excision of the ccdB gene for negative selection in plasmid pBXNPHM3, followed by treatment with DNA Polymerase I Large (Klenow) Fragment (NEBiolabs) and blunt-end ligation. ..

    Selection:

    Article Title: Functionally-derivatized Nanoantibodies as novel tools for Giardia lamblia cyst detection
    Article Snippet: .. Control plasmid 139 was generated by excision of the ccdB gene for negative selection in plasmid pBXNPHM3, followed by treatment with DNA Polymerase I Large (Klenow) Fragment (NEBiolabs) and blunt-end ligation. ..

    Ligation:

    Article Title: Functionally-derivatized Nanoantibodies as novel tools for Giardia lamblia cyst detection
    Article Snippet: .. Control plasmid 139 was generated by excision of the ccdB gene for negative selection in plasmid pBXNPHM3, followed by treatment with DNA Polymerase I Large (Klenow) Fragment (NEBiolabs) and blunt-end ligation. ..



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